1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCGGTCTTCGGgtattggttttaaaacttttcttattcggacgttcagaacttgcaagttgcatttgaattgatggttgctcttgtgtgctccaaattctgcag
species | Arabidopsis thaliana |
transcript | AT3G15520.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTCGGTCTTCGG ATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATATEST: gi|86085779|gb|DR381538.1|DR381538
genomic: CTCGGTCTTCGGgtattggttt ... aattctgcagATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATAT
EST: TCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCAGTCTTCGG ATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATATEST: gi|19742656|gb|AU228009.1|AU228009
genomic: TCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCGGTCTTCGGgtattggttt ... aattctgcagATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATAT
EST: TCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCGGTCTTCGG ATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATAT
genomic: TCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCGGTCTTCGGgtattggttt ... aattctgcagATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCGGTCTTCGGgtattggttttaaaacttttcttattcggacgttcagaacttgcaagttgcatttgaattgatggttgctcttgtgtgctccaaattctgcag
- - - - GGAGGA
- - - - - GAGGAT