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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGGgtgagttttatgtcctactcaatgtttacgaaagtatccatctcgttcttgcaatggtgtgaatattcttgtgtttttccattgtcaaag

Basic information

species Arabidopsis thaliana
transcript AT1G79500.4
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79500.4 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv19s0085g00720.t01 (Vitis vinifera), 5'ss of exon 11
GTTCATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGGgtgagttttatgtcctactcaatgtttacgaaagt--atccatctcgttcttgcaa---tggtgtgaatatt-cttgtgtttttccattgtcaaag-------------------------------------------------------------------------
|| ||  |||||||||||| ||||||||| || |||||||| ||||||||||| || ||    | |  ||| |  ||  ||||  || ||  |  |   ||| |   |  | |||  ||| |||    ||   ||  |  | |                                                                          
GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttcat---ttgcataatttccactcaagtttatgcacattttatatgcgagtttaatctgagaattgctttcacttcatcacagatagaaaccatggtcattgtcatgagggtttcatttaactataaactaaataagttattgttttttttcttgacaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124754241|gb|EH844371.1|EH844371
EST:     ATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGG                         CCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATTG
genomic: ATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGGgtgagtttta ... attgtcaaagCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATTG
EST: gi|164126727|gb|EL968891.1|EL968891
EST:     AGGTTCATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGG                         CCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTC
genomic: AGGTTCATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGGgtgagtttta ... attgtcaaagCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTC