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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGCTGCGTGTTCTGCATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaataagttgtcatttcaagacttttgtgaaacagtagttattgttgtcctgattactgattataaatcgctactgtgggttttcttaacag

Basic information

species Arabidopsis thaliana
transcript AT1G11910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 10
AGATGCTGCGTGTTCTGCATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaataagttgtcatttcaagacttttgtgaaacagtagttattgttgtcctgattactgattataaatcgctactgtgggttttcttaacag
 |||||||  |||||||||||||||||||||||| | ||||| |||| |||| ||||||| ||   |||  | ||  | ||| |  |||| | ||| ||||| |    | |||| | |||| |  | ||  |||    |||  |  ||    | ||     || || |||  | | || ||  |             
GGATGCTGGTTGTTCTGCATGTGAGATGGCTGTTATTTGGATGCAGAACCAGCTGAGGCAGAATCAGACAGAGGATAGGATAATAGACTATGCCAATGAGgtga---gttagtttttattttactatttgagtgctcaagttctgttttggattctagc--cttatgata--ttgatattgcag-------------

upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 10
AGATGCTGCGTGTTCTGCATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaataagttgtcatttcaagacttttgtgaaacagtagttattgttgtcctgattactgattataaatcgctactgtgggttttcttaacag
 |||||||  |||||||||||||||||||||||| | ||||| |||| |||| ||||||| ||   |||  ||||  | ||| |  |||| | ||| ||||| |    | | |  | |||| |  || |  || |  ||     | || |||   |   |  ||||| ||      |  ||  |   ||        
GGATGCTGGTTGTTCTGCATGTGAGATGGCTGTTATTTGGATGCAGAACCAGCTGAGGCAGAATCAGACAGAAGATAGGATAATAGACTATGCCAATGAGgtga---gttaatctttattttactacctgagt-actcaaatcctgtttttgcttttgattttgattctagccttatgatgatgacatttcag----

upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G01500.1 (Glycine max), 5'ss of exon 11
AGATGCTGCGTGTTCTGCATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaataagttgtcatttcaagacttt--tgtgaaacagtagttattgttgtcctgattactgattataaatcgctactgtgggttttcttaacag
 | |||||| ||| |||||||||||||||| ||||| ||||| |||| |||| |||| | |||   ||| ||||| |  ||| | |  ||| ||||| |||| |   |   ||  | ||||    | |     ||    | | |  | ||| | |   |  |  |||| ||| || | || ||  |             
TGGTGCTGCTTGTCCTGCATGTGAGATGGCGGTTGTTTGGATGCAGAACCAGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagttgtcttaattttgctattcaagcgtcctgctgcacctcttgatttatagcctcatgatgatagattgatattgcag-------------

upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 11
AGATGCTGCGTGTTCTGCATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaataagttgtcatttcaagacttttgtgaaacagtagttattgt-tgtcctgattactgattataaatcgctactgtgggttttcttaacag
 | |||||| ||| |||| ||||||||||||||||| ||||| |||| |||| |||| | |||   ||| ||||| |  ||| | |  ||| ||||| |||| |    | |||||||  ||||    | |  | || ||     |  ||  | || |||||  |      |    |  | ||  |             
TGGTGCTGCTTGTCCTGCGTGTGAGATGGCTGTTGTTTGGATGCAGAACCAGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtga---gtcagttgtc--ttcatttttctattcaagcatc--ctgctgcatctcttgatttattgcctcatgatgacattgcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076971|gb|DR372728.1|DR372728
EST:     AGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|47832120|gb|CK121804.1|CK121804
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|116410551|gb|EG453143.1|EG453143
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|116484531|gb|EG527123.1|EG527123
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|116484523|gb|EG527115.1|EG527115
EST:     TGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: TGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|116389504|gb|EG432096.1|EG432096
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCA
EST: gi|116417009|gb|EG459601.1|EG459601
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|86075703|gb|DR371460.1|DR371460
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTG-AMTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
EST: gi|116410552|gb|EG453144.1|EG453144
EST:     AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAG                         CTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA
genomic: AGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGgtaaccaata ... ttcttaacagCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGCAGTTGACTGTGCA