Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaattgataatatgaatatttcatctttcagttcaatccaataaatattttgagttcaatccatttaaaaaatttaacttataattttttattttcag

Basic information

species Arabidopsis thaliana
transcript AT1G08930.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125083012|gb|EL143727.1|EL143727
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCC
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCC
EST: gi|124774550|gb|EH864679.1|EH864679
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGG
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGG
EST: gi|125270112|gb|EL284197.1|EL284197
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAAT
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAAT
EST: gi|125038553|gb|EL110822.1|EL110822
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGGTT
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGGTT
EST: gi|124855455|gb|EH939892.1|EH939892
EST:     CTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCAACAATTATG
genomic: CTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCA-CAATTATG
EST: gi|124905191|gb|EH979271.1|EH979271
EST:     TAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG
genomic: TAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaattgataatatgaatatttcatctttcagttcaatccaataaatattttgagttcaatccatttaaaaaatttaacttataattttttattttcag

- - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG