1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTgtgagtattaccttgtaaaaagttcaggtttaggcccattgttttgattgcaagatccagtgtaagtgtgtatgggtttcaaaaacatcatctaagagtt...
species | Arabidopsis thaliana |
transcript | AT5G59960.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCT GTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATEST: gi|125306685|gb|EL320770.1|EL320770
genomic: CAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTgtgagtatta ... tgtcttgcagGTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATAT
EST: CAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCT GTTGGGCGTTACCCGAGGCATCTCAEST: gi|125185626|gb|EL200580.1|EL200580
genomic: CAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTgtgagtatta ... tgtcttgcagGTTGGGCGTTACCCGAGGCATCTCA
EST: CAGCCTGGGATGCCTTGGATTCCCTCTTTCCT GTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATEST: gi|124732203|gb|EH823605.1|EH823605
genomic: CAGCCTGGGATGCTTTGGATTCCCTCTTTCCTgtgagtatta ... tgtcttgcagGTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATAT
EST: ATGCTTTGGATTCCCTCTTTCCT GTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATAT
genomic: ATGCTTTGGATTCCCTCTTTCCTgtgagtatta ... tgtcttgcagGTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTgtgagtattaccttgtaaaaagttcaggtttaggcccattgttttgattgcaagatccagtgtaagtgtgtatgggtttcaaaaacatcatctaagagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca