Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttttcttgaccactttttgccattctatctggttttcgttgcctcttttatctgaattcatatgattgagaacctcactgtttgatct...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G40760.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttttcttgaccactttttgccattctatctggttttcgttgcctcttttatctgaattcatatgattgagaacc-tcactgtttgatct-
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GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcc--tctttccattcaattttcatgggaattattactctcttctgtcatttttttctgcccagtaattctgacacaaactaatcaatatcagtacca
upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 10
GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttttcttgaccactttttgccattctatctggttttcgttgcctc-ttttatctgaattcatatgattgagaacc-tcactgtttgatct
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GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcc--tctttccattcaattttcattggaattattactctcttctttcattttattctgcctacttttttctgacacaaactaatcaatatcagtacc
upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 10
GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaa------caaatacttttcttgaccactttttgccattctatctggtt-ttcgttgcct--cttttatctgaattcatatgattgagaacctcactgtttgatct-------------------------
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GTTTTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAAGCCTGAGCACATTCGGGATGAGAAACTGAAGgtttgtctctttccattcaatttgtgtggattttttttctccctcttcagtcattcaattcttgctttccattcttgttcataatgctcatagcttctataccactttcttgttgatatacatacaaattgcag
upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttttcttgaccactttttgccattctatctggttttcgttgcctcttttatctgaattcatatgattgagaacctc-actgtttgatct---
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GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCACATCCGAGATGAGAAAGTGAAGgtgcatac-tttgatactctctcacataaaactcataggcaactgttttattttattatttactaaaa---attttgttgacatcttctaataatcaaaataaa
upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S192_39V6.4 (Physcomitrella patens), 5'ss of exon 10
GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttt-----tcttgaccactttttgccattctatctggtt--ttcgttgcctcttttatc--tgaattcatatgattg------agaacctcactgtttgatct--------------------------------------------------------------
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ATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAGgtaaggataatctttctggatttgcagcaatacttgttgtaccaaatgcttcatacatttcatgttttcttattgtagttgtgtgattggtttgcatgaaactgctttccgatactaattaagcttcaccattacactttttaatttgtttcaggttgtgatgtttttggtggtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164089728|gb|ES206500.1|ES206500EST: GAGAAAGTGAAG GTGC-TCAATCTGTGGTTCCGATAAGCGATGACGAGGTAGTTCTTGGACAA
genomic: GAGAAAGTGAAGgtgaacaaat ... tgaacttcagGTGCTTCAATCTGTGGTTCCGATAAGCGATGACGAGGTAGTTCTTGGACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttttcttgaccactttttgccattctatctggttttcgttgcctcttttatctgaattcatatgattgagaacctcactgtttgatct
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