Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGgtttgagacaatatcttcattgattaaacacaatcttcaggataaagctgtttgtaggaactttcctttggtaataatctactcaatttttgttttttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G11710.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G08040.1 (Glycine max), 5'ss of exon 11
GTGGCATGGTTAAGGAATTAAC---AGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGgtttgagacaatatcttcattgattaaacacaatcttcaggataaagctgtttgtaggaactttcctttggtaataatctactcaatttttgttttttgtag
   | |||||||||||| | ||   |||  | ||||||||||||||| ||||| |||||  ||||||||| || |||||||| ||||||||||| || || |||| || | || ||  ||   || | |   |   || | |   |||  || ||        || |  ||   | |||   |  |  ||||||| || ||  ||
---GTATGGTTAAGGAACTTACCAAAGGCAGCTATAAAATCAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGACTTTACTCCTCCTTTTAGgtgtgtggca-tacattatctggtcactgatggtcatta---taattctatt--------ctatttttgaatgatagatt--tggatttttgattgttacag

upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G21870.1 (Glycine max), 5'ss of exon 11
GTGGCATGGTTAAGGAATTAAC---AGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGgtttgagacaatatcttcattgattaaacacaatcttcaggataaagctgtttgtaggaactttcctttggtaataatctactcaatttttgttttttgtag
   | |||||||||||| | ||   |||  | ||||||||||||||| ||||| |||||  ||||||||| || |||||||| ||||||||||| || || |||| ||      ||  ||   || | |     ||| ||||  ||||  || ||        || |  ||   | |||   |  |  ||||||  || ||  ||
---GTATGGTTAAGGAACTTACCAAAGGGAGCTATAAAATCAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGACTTTACTCCTCCTTTTAGgtgtgtagtg-tacattatctggtcac---taatgttcattataattctatt--------ctatttttgaatgatagatt--tggatttttaattgttacag

upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G03140.1 (Glycine max), 5'ss of exon 9
GTGGCATGGTTAAGGAATTAAC---AGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGgtttgagacaatatcttcattgattaaacacaatcttcaggataaagctgtttgtaggaactttcctttggtaataatctactcaatttttgttttttgtag
   | |||||||||||  | ||   |||  | ||||||||||||||| ||||  |||||  ||| ||||| || |||||||| ||||||||| |||| || ||||  | |    ||  ||   || | |     |||  |||  ||||  |||||        || |  ||   |  ||   |  |  ||||||  || ||  ||
---GTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGgtgcgtggtg-tacattatctggtcag---taatggtcattataattctgtt--------ctatttttgaattttagatt--tggatttttaattgtttcag

upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv14s0060g02350.t01 (Vitis vinifera), 5'ss of exon 27
GTGGCATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGgtttgagacaatatcttcattgattaaacacaatcttcaggataaagct--gtttgtaggaactttcctttggtaataatctactcaatttttgttttttgtag-----
   | ||||| |||||| | |||||||| || ||||| || ||  |||| ||||| |  || |||||||||||||| |||||||| |||||||| |||||||||              ||||| || | | |||||   |   ||||       |  |  | |  |||||  | |||||  |     |||  ||||||   ||      
---GTATGGTCAAGGAACTTACAGGTGGCTACAAAATTAAATACCATGCAAATGGCTTGGATAAGGATCCAATTGAGATCGACTTCACTCCACCTTTCAGgttt--------------attgactata-ataatctatggtgcaaagtataacctcaaacatccatccttctggaataacttttgtgattgatgttttaaatattgcag

upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv15s0024g00700.t01 (Vitis vinifera), 5'ss of exon 12
GTGGCATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGgtttgagacaatatcttcattgattaaacacaatcttcaggataaagc-tgtttgtaggaactttcctttggtaataatctactcaatttttgttttttgtag-----
   | ||||| |||||| | |||||||| || ||||| || ||| |||| ||||| |  || ||||| |||||||| || |||||||||||||| |||||||||              ||||| || |   |||||   |   ||||  |      |   |  |  |||  | |||||  |     |||  ||||||   ||      
---GTATGGTCAAGGAACTTACAGGTGGCTACAAAATTAAATATCATGCAAATGGCTTGGATAAGGACCCAATTGAGATTGACTTTACTCCACCTTTCAGgttt--------------attgactacat-taatctatggtgcaaagtataacctcaaacatctatcttctggaataacttttgtgattgatgttttaaatattgcag