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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAATAGAATCAGCTGTGAAGAATGTTCCAAAAGTATTTGTTGTATCTACTCTTGTTAGTGTGATGCCTGCGCAACCATTTATATTTCGGAACTACCAGgtacaacacttctctttttacttttggttaattctttattctctgttaattgcgtatgaagtttttaccactttaaatttgtctgtctattcttcttgtgtgtatcatgttctctcttttctatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G61850.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 9
ACTAATAGAATCAGCTGTGAAGAATGTTCCAAAAGTATTTGTTGTATCTACTCTTGTTAGTGTGATGCCTGCGCAACCATTTATATTTCGGAACTACCAGgtacaacacttctctttttacttttggttaattctttattctctgttaattgcgtatgaa-gtttttaccactttaaatttgtctgtctattcttcttgtgtgtatcatgttctctcttttctatttgcag-----
| | ||||| || |||||||| ||||| || ||||| ||||||||||| ||  | || ||  |||||||||| ||||||||| ||||||| || || ||||| | |  ||  |  | ||  ||    ||  |   | ||      | |||| | | |     |  ||   | | ||  ||| ||| | || | ||    | | | |||   | | || || |||| |  |      
AATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACCTTGGTGAGCATGATGCCTGCACAACCATTTGTATTTCGCAATTATCAGgttcgaagctaatactgtttattggtatttgtaaataatggctattaaattacatttattcatgattgttaatgtattttt-tctttataatatttaattctctgtcactctttgtcgttactatctataatgcag

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 10
---------------------------------------------ACTAATAGAATCAGCTGTGAAGAATGTTCCAAAAGTATTTGTTGTATCTACTCTTGTTAGTGTGATGCCTGCGCAACCATTTATATTTCGGAACTACCAGgtacaacacttct----ctttttacttttggttaattctttattctctgttaattgcgtatgaagtttttaccactttaaatttgtctgtctattcttcttgtgtgtatcatgttctctcttttctatt-tgcag
                                             | | ||||| || |||||||| ||||| || ||||| ||||||||||| ||| | || ||  |||||||||| ||||||||  ||||||| || || |||||   |  ||  |     || ||  | || || |||  |   |  |   |||      |     ||| |||     ||   | | | |     ||  |  | |||   || |  ||  |  | |||||  |||||
CGAAAGGCTATTGAAGGAAATGTGTGCTGATGAAGATGGAGATCTAATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACTTTGgtgagcatgatgcctgcacaaccattcgtatttcgcaattatcaggtttgaagctaatactgtttattggtgtttgtaaataatggctattaaattacacttattcatggttgttaatgtattgtttctttataatatttaattctctgtccctctttgtcgttactatctataatgcag

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S69_157V6.1 (Physcomitrella patens), 5'ss of exon 10
ACTAATAGAATCAGCTGTGAAGAATGTTCCAAAAGTATTTGTTGTATCTACTCTTGTTAGTGTGATGCCTGCGCAACCATTTATATTTCGGAACTACCAGgtacaacacttctc---------tttttacttttggttaattctttattctctgttaattgcgtatgaagtttttaccactttaaatttgtctgtctattcttcttgtgtgtatcatgttctctcttttctatttgcag-------------------------------------
|||||| |||||||| ||||||   ||||||||||| |||||||| ||| |||||||||||||||  ||||| || || ||| | || || || ||||||||| |  | ||  |         | | | || ||  |||| |   | ||   | ||  |    | || |||||  || |   ||  |   ||    | |||   || |  |  | |||| | |  |  |   | || |                                      
ACTAATTGAATCAGCAGTGAAGGGCGTTCCAAAAGTCTTTGTTGTTTCTGCTCTTGTTAGTGTGACTCCTGCTCAGCCGTTTGTGTTCCGCAATTACCAGgtataggattttgccacaaatattatcttctcttctttaactgcctttttaatatttttattatttgtagtttggacgataatatctgcttcgtcttcttccagttcta-gctttatgtgccccgtagttgctatgaaagaatgagttctcttcataattgtgatcgtgggtgtag