Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGTTTGGTATGGGAATCAACAAGCCTGATGgttagtacttaagtagtgctaatttttgtttagttgatatttgatataccttcactttcagttttccttagtgcagatttctttctcttggaagctatta...

Basic information

species Arabidopsis thaliana
transcript AT1G31360.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os11g48090.4 (Oryza sativa), 5'ss of exon 11
GTTGCGTTTGGTATGGGAATCAACAAGCCTGATGgttagtacttaagtagtgctaattt-ttgtttagttgatatttgatataccttcactttcagttttccttagtgcagatttctttctcttggaagctatta-----
|| |||||||| ||||||||||||||||| ||||||  ||   |||||  || |  ||  |  |   | ||| || |||| |        | |   | | |  |  |  |    |||   | |  |   | |  |     
GTGGCGTTTGGAATGGGAATCAACAAGCCAGATGgtgcgt---taagttttggtctttcatcataatgatgacatatgatgtgttcaagatgtagatgtgcacttatctaa---tctaattatatggtaccagcaggatt

upper sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 10
GTTGCGTTTGGTATGGGAATCAACAAGCCTGATGgttagtacttaagtagtg-ctaatttttgtttagttgatatttgatataccttcactttcagttttccttagtgcagatttctttctcttggaagctatta---
|| || |||||||||||||||||||| || ||||||||||| |  | |  || || |   || || ||  | ||| | || ||   |   | |  ||| | || | ||   |  | |||      | |  | ||    
GTAGCTTTTGGTATGGGAATCAACAAACCAGATGgttagtattgcaatgctgtctcaaaattcttcagcag-tatcttatctataattgatgt--gttatgct-attgataacatttttgcaactgtaattgttttct

upper sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 10
GTTGCGTTTGGTATGGGAATCAACAAGCCTGATGgttagtac------ttaagtagtgctaa-tttttgtttagttgatatttgatataccttcactttca----gttttccttagtgcagatttctttctcttggaagctatta
|| || |||||||||||||| ||||||||||||||| ||||       ||| ||  |   || ||| || |   ||  ||||||| |||   | | ||  |    ||  | |||  | |   | || || || |           
GTGGCCTTTGGTATGGGAATTAACAAGCCTGATGgtcagtatcggatattacgtgttctaaagtttctgatctatttttatttgaaatatacttaattagacatcgtacttcttcatactcttgtcattttcct-----------