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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTGGCATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGTCTTGACTTATTCGGAACAGgtagctattttctaatgttagattgtgctcagtcctcaatcagttgtaaccctttctaatatggtttcgttgagatgataaccag

Basic information

species Arabidopsis thaliana
transcript AT1G23900.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23900.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g56110.1 (Oryza sativa), 5'ss of exon 10
TGTGTGGCATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACA---------AATCAGTCTTGACTTA--TTCGGAACAGgtagctattttctaatgttagattgtgctcagtcctcaatcagttgtaaccctttctaatatggtttcgttgagatg-ataaccag
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TGTGTGGCATGCCCTCGTTGTTGTAATAAGCAATGCATCAGAACTTCAAGGATATTCAGTGAGGTTATTATACATGGCTCTACAAGCATTTGTCGATCAGgtttggaaaaaaaaatgtgtttgttatgatgcatattgttccaccttaacctaactga---tttgtgtaacttggttgcactacactgtgtag----

upper sequence: AT1G23900.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G054210_T01 (Zea mays), 5'ss of exon 10
TGTGTGGCATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGTCTTGACTTATTCGGAACAGgt----agctattttctaatgttagattgtgctcagtcctcaatcagttgtaaccctttctaatatggtttcgttgagatgataaccag
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CATATGTCATGCCCTTATTGTTGTACTAAGTAATACATCAGAGCTTCAAGGATATTCAGTGAGGTCATTGTATAAGGCCTTACAAGAATATGGTAAACAGgttaggggaaagtttatactctcca--tgcattccattccatctcatcctacttgatgcctgtaacactgtcaatattataatgattag