1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCATGTGTCTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaaactctctacctatctatcgctctaggtgtaggatacatggaagctgtttaacatcaaccttcatattgatctggcgaagaaaaatgtact...
species | Arabidopsis thaliana |
transcript | AT1G12840.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|124773162|gb|EH863291.1|EH863291
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: AAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|125044624|gb|EL116893.1|EL116893
genomic: AAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: AAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|86082327|gb|DR378086.1|DR378086
genomic: AAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|124799985|gb|EH889650.1|EH889650
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGEST: gi|116402070|gb|EG444662.1|EG444662
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|125001054|gb|EL073323.1|EL073323
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGEST: gi|124878731|gb|EH958168.1|EH958168
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAEST: gi|124892546|gb|EH971448.1|EH971448
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGA
EST: TTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|164065341|gb|ES164269.1|ES164269
genomic: TTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: CTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|124926247|gb|EL004124.1|EL004124
genomic: CTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAEST: gi|124725458|gb|EH816860.1|EH816860
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCA
EST: TACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGEST: gi|124833467|gb|EH917906.1|EH917906
genomic: TACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGG
EST: GAAAAGAAAGTACGCTCCATTCTTGAACNCTTGTGTGATTCTACCAACAG TTTATACTGGAAAAG
genomic: GAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaa ... aacaatgcagTTTATACTGGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGTGTCTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGgtatgttaaaactctctacctatctatcgctctaggtgtaggatacatggaagctgtttaacatcaaccttcatattgatctggcgaagaaaaatgtact
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa