Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGGTCCCTGCACTTGTCGCCGCCTTCTTTCCCTCACATCACATCTTCGGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAAgtatttcctcatctccctttatatttgtttccttgtttcccctcctttgtttcaaaccctcaaattaacactgcgatctcaattgcttgctag

Basic information

species Arabidopsis thaliana
transcript AT5G65950.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396088|gb|EG438680.1|EG438680
EST:     GGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAA                         ATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTC
genomic: GGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAAgtatttcctc ... tgcttgctagATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTC
EST: gi|116416782|gb|EG459374.1|EG459374
EST:     GGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAA                         ATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTC
genomic: GGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAAgtatttcctc ... tgcttgctagATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTC
EST: gi|116396089|gb|EG438681.1|EG438681
EST:     GGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCAACAGCCTCAA                         ATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGGGGTCCAGTC
genomic: GGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAAgtatttcctc ... tgcttgctagATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTC