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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACCTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCGCCTACTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgttagtcaattttccctcaagatgctttctaaaaatcttgttctttggttcatgaatttgtggtttaattgtgaaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G58340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430335|gb|EG472927.1|EG472927
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430323|gb|EG472915.1|EG472915
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430318|gb|EG472910.1|EG472910
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430333|gb|EG472925.1|EG472925
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430327|gb|EG472919.1|EG472919
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430324|gb|EG472916.1|EG472916
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430332|gb|EG472924.1|EG472924
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430336|gb|EG472928.1|EG472928
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430320|gb|EG472912.1|EG472912
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
EST: gi|116430321|gb|EG472913.1|EG472913
EST:     CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCG                         GATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA
genomic: CTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGgtgagtgtta ... gtgaaaacagGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGA