1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTCGTTCTCACCGGAAAACCGAAGAATATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGgtacgttttcgctacgtagatccacttttctcttccaatttcggagctttcctcagaaacttttacactgaactaagtatggaaattgagaacattgttc...
species | Arabidopsis thaliana |
transcript | AT5G58030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAGTACTCCAACGTCCTTGACAAGCCCTCTCAGCAAAGGCAAGCAAGAG GTGAGCTTGAGCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAATEST: gi|19874921|gb|AU235752.1|AU235752
genomic: ACAGTACTCCAACGTCCTTGACAAGCC-TCTCAGCAAAGGCAAGCAAGAGgtacgttttc ... tgtgttgtagGTGAGCTTGACCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAAT
EST: AACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAG GTGAGCTTGACCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAATEST: gi|47829107|gb|CK118791.1|CK118791
genomic: AACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGgtacgttttc ... tgtgttgtagGTGAGCTTGACCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAAT
EST: AACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAG GTGAGCTTGACCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAAT
genomic: AACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGgtacgttttc ... tgtgttgtagGTGAGCTTGACCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGTTCTCACCGGAAAACCGAAGAATATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGgtacgttttcgctacgtagatccacttttctcttccaatttcggagctttcctcagaaacttttacactgaactaagtatggaaattgagaacattgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaacat