1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AACAGTGCCCTTTCGCTCACGCTTTGAGTCGTATCTGCTCTCTTCTTAATCCGCCGTCTCTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAGgtaatcaaatctatctccgatgttgatctactctgtttctccggatttatgatttctctattcaatttccgatgattgttagatctacggggcttttgatcctgcgattactgttgctttttgtttgttaatcag
species | Arabidopsis thaliana |
transcript | AT5G50850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGCCGGCGTGGTTAGATCGTACAAAGCTCAG AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGEST: gi|116443796|gb|EG486388.1|EG486388
genomic: TTCGCCGGCGTGGTTAGATCGTACAAAGCTCAGgtaatcaaat ... tgttaatcagAGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG
EST: CCGCCGTCTCTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAG AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGEST: gi|116376958|gb|EG419550.1|EG419550
genomic: CCGCCGTCTCTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAGgtaatcaaat ... tgttaatcagAGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG
EST: CTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAG AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGEST: gi|125027934|gb|EL100203.1|EL100203
genomic: CTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAGgtaatcaaat ... tgttaatcagAGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG
EST: CCGTCTCTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAG AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGACTC
genomic: CCGTCTCTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAGgtaatcaaat ... tgttaatcagAGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGTGCCCTTTCGCTCACGCTTTGAGTCGTATCTGCTCTCTTCTTAATCCGCCGTCTCTCACTTTTTCGCCGGCGTGGTTAGATCGTACAAAGCTCAGgtaatcaaatctatctccgatgttgatctactctgtttctccggatttatgatttctctattcaatttccgatgattgttagatctacggggcttttgatcctgcgattactgttgctttttgtttgttaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA