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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCCTGCTGACCTTGTTCGACAAACCCGCGATCTCCTTCTCTTCTCCGATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttttatttatattctccaataaaagatgattctttcaatgtgtgcaaattcttccatgaattgttgaattcttcttggtgtttggttttggtatcttcattgcaataatgtcatttctctctatgccatttgtgctccaattgaattaatggtatgtggttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G47540.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86030110|gb|DR325863.1|DR325863
EST:     ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAG                         ATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGG
genomic: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttt ... gtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGG
EST: gi|86030109|gb|DR325862.1|DR325862
EST:     ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAG                         ATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGG
genomic: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttt ... gtggttgcagATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGGG
EST: gi|124841259|gb|EH925698.1|EH925698
EST:     ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAG                         ATGGCGGAATTAAGCCGG
genomic: ATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACGCGACGAAAAGgttccatttt ... gtggttgcagATGGCGGAATTAAGCCGG