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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCCTCGCTATCGACGACGATCAGAAGTTTCGTATCGGGGATTCCAACCAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctctcttcctaattctgcaattgaaatcatcaaatgtatgcataagaaacctaatttgtagaaaaatcatcttgctttatactgatgattggttgattgaatttgaatag

Basic information

species Arabidopsis thaliana
transcript AT5G43780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|146217030|gb|ES431053.1|ES431053
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
EST: gi|116475583|gb|EG518175.1|EG518175
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAGGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
EST: gi|145309240|gb|ES323575.1|ES323575
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
EST: gi|116436094|gb|EG478686.1|EG478686
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
EST: gi|116407563|gb|EG450155.1|EG450155
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
EST: gi|116475594|gb|EG518186.1|EG518186
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAGGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
EST: gi|116436216|gb|EG478808.1|EG478808
EST:     CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGA                         TATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG
genomic: CAAGTCACACTCGTTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGAgtaagtctct ... atttgaatagTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGG