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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTGACAAAAGCAGGAGAGTTTAAGGAAATGCTCGCTATAGAAAAAACATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgtatattatatatatatatcatatatgtattgatcgttcttgagttgtagcatgcttttcatag

Basic information

species Arabidopsis thaliana
transcript AT5G25870.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466164|gb|EG508756.1|EG508756
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466174|gb|EG508766.1|EG508766
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466166|gb|EG508758.1|EG508758
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466179|gb|EG508771.1|EG508771
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466163|gb|EG508755.1|EG508755
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466171|gb|EG508763.1|EG508763
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466176|gb|EG508768.1|EG508768
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466175|gb|EG508767.1|EG508767
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466168|gb|EG508760.1|EG508760
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466178|gb|EG508770.1|EG508770
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466180|gb|EG508772.1|EG508772
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466173|gb|EG508765.1|EG508765
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
EST: gi|116466165|gb|EG508757.1|EG508757
EST:     CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAG                         ATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA
genomic: CATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgt ... cttttcatagATTTCAGAGATACTTGTGAAGCTCGAGAAGAAATACTATGAGCTAGAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATGTGACAAAAGCAGGAGAGTTTAAGGAAATGCTCGCTATAGAAAAAACATGGCAAATCTGGGAGGAGCTCCTTAAAGAGCATGACGAATTTGAGGAGgtatgtatgtatattatatatatatatcatatatgtattgatcgttcttgagttgtagcatgcttttcatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG