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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATCCCTCAACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTTATTGCACCCTTTGCTTTCTTCTTCGAAAGgttatatccatttaattattttcattacattctttgaattttattcgccaataatcgatagattgttaatggattctaactacgtatattccgttttacag

Basic information

species Arabidopsis thaliana
transcript AT5G07050.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G042364_T02 (Zea mays), 5'ss of exon 1
AAATATCCCTCAACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTTATTGCACCCTTTGCTTTCTTCTTCGAAAGgttatatccatttaattattttcattacattctttgaattttattc--gccaataatcgataga-ttgttaatggattctaactacgtatattccgttttacag
|  | |||||||||  ||| ||||||||||| || || |||||||||||||| ||  ||||||||| |  ||||||||| |||||| || || | || ||||  ||  || |  | || |    ||   ||  | ||  | ||| |  || |   |||  |||| |||  |||    |       | |  || | |        
AGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTTGCCACCGTCTCTATTGCACCGTTTGCTCTCATCCTTGAGAGgtactactcactacagtactcagtttctcttgctcgatctgtataccagctagccatcactagacttgggaataatataatgtggcatgcatgcag--------

upper sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 1
AAATATCCCTCAACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTTATTGCACCCTTTGCTTTCTTCTTCGAAAGgtt------atatccatttaattattttcattacattctttgaattttattcgccaataatcgatagatt-gttaatggattctaactacgtatattccgttttacag
|  | || ||||||   || |||||||||||||||||||| ||||| ||||| ||  |||||||||| || || || || |||||  |  | || ||||||||      | ||  |  |||    |    | |    |||   |||||| | |    |     | || || |  |||  || || |||   | | |||  |||| |||
AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgt-ttcaattttccag