1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATCTCAATCTCGATGCACCTCACTCCATGGGAACGACCATCATCGGCGTCACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttccccccttctctacttttctagggttttagttcctcttcgttgggtttgtatttgagttttgttttcgtttcaatcggaacaaagaataatcctaatcgattgttctatttgggtaatttagagaaagctgttaaatttgggatctgttgtaaattactcgcgcag
species | Arabidopsis thaliana |
transcript | AT4G31300.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATAEST: gi|116475826|gb|EG518418.1|EG518418
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATA
EST: CACTTACAATGGAGGTGTCGTCCCCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCEST: gi|124904356|gb|EH978436.1|EH978436
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGC
EST: CACTTACAATGGAGGTGTCGTCCCCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCTTCTGATAAGATTEST: gi|116444628|gb|EG487220.1|EG487220
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAAGATT
EST: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATAEST: gi|47831542|gb|CK121226.1|CK121226
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATA
EST: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATAEST: gi|86078013|gb|DR373770.1|DR373770
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATA
EST: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCEST: gi|116475847|gb|EG518439.1|EG518439
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGC
EST: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCEST: gi|125066719|gb|EL133487.1|EL133487
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGC
EST: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCTTCTGATAAEST: gi|116444625|gb|EG487217.1|EG487217
genomic: CACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAA
EST: CTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCG GTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATA
genomic: CTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttc ... actcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTCAATCTCGATGCACCTCACTCCATGGGAACGACCATCATCGGCGTCACTTACAATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGgtgagatttccccccttctctacttttctagggttttagttcctcttcgttgggtttgtatttgagttttgttttcgtttcaatcggaacaaagaataatcctaatcgattgttctatttgggtaatttagagaaagctgttaaatttgggatctgttgtaaattactcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG