1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACGATCACTTGAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCgttagtcttcttcgatccccaattttcgattcgaatcttcattttcttcactaagtttttatgatttcttcgttttttttttttttttttgcag
species | Arabidopsis thaliana |
transcript | AT4G15900.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGC CAAGCAGATTCGTCTCAGCCATAAGEST: gi|47829925|gb|CK119609.1|CK119609
genomic: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCgttagtcttc ... ttttttgcagCAAGCAGATTCGTCTCAGCCATAAG
EST: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGC CAAGCAGATTCGTCTCAGCCATAAGEST: gi|19875877|gb|AU236708.1|AU236708
genomic: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCgttagtcttc ... ttttttgcagCAAGCAGATTCGTCTCAGCCATAAG
EST: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGC CAAGCAGATTCGTCTCAGCCATAAGEST: gi|124767503|gb|EH857633.1|EH857633
genomic: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCgttagtcttc ... ttttttgcagCAAGCAGATTCGTCTCAGCCATAAG
EST: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGC CAAGCAGATTCGT
genomic: GAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCgttagtcttc ... ttttttgcagCAAGCAGATTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACGATCACTTGAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCgttagtcttcttcgatccccaattttcgattcgaatcttcattttcttcactaagtttttatgatttcttcgttttttttttttttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC