1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCGTCGTCAGCCACATTCACCGGTACTCATCTGACCAAGCTAGGGTTTCGCAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcctacttcacttgtttccattgagattctggtttttttaggagaatgcttagtattgaacaatttgtatgattcattgtttttggatttgga...
species | Arabidopsis thaliana |
transcript | AT3G16480.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCTEST: gi|86060722|gb|DR356479.1|DR356479
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATAATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCTEST: gi|86060721|gb|DR356478.1|DR356478
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCTEST: gi|86060717|gb|DR356474.1|DR356474
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCNAGTTCTAGTGCTEST: gi|86060718|gb|DR356475.1|DR356475
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCTEST: gi|86060714|gb|DR356471.1|DR356471
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCTEST: gi|86060716|gb|DR356473.1|DR356473
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCTEST: gi|86060720|gb|DR356477.1|DR356477
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
EST: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAG GGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
genomic: CAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcc ... gtgtttatagGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTAGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTCGTCAGCCACATTCACCGGTACTCATCTGACCAAGCTAGGGTTTCGCAGTCATCATCATGTACCGTACGGCAGCTTCTCGAGCCAAGGCCCTTAAGgtcaatgtcctacttcacttgtttccattgagattctggtttttttaggagaatgcttagtattgaacaatttgtatgattcattgtttttggatttgga
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