1 5' 3' | 2 5' 3' | 3 5' 3' |
TAGCCGTCTTCTTCTTCATTTTTCTCTAGGGTTTCTAATCTCTTATAACAACACCGCAAAAGAGTAAAGGGACGCTAGAGAGAGCTCGAAGACGCAATGGgtaagcctaaattctcaaactttttcctctgttaacacacaatttcgtacgtttaggttatgagatttgattttatattgtgaaatggaatctgaacag
species | Arabidopsis thaliana |
transcript | AT2G39390.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACCGCAAAAGAGTAAAGGGACGCTAGAGAGAGCTCGAAGACGCAATGG CGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAAAAGCTGATCTTTCGGEST: gi|152038390|gb|AV821605.2|AV821605
genomic: ACACCGCAAAAGAGTAAAGGGACGCTAGAGAGAGCTCGAAGACGCAATGGgtaagcctaa ... atctgaacagCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAAAAGCTGATCTTTCGG
EST: ACACCGCAAAAGAGTAAAGGGACGCTAGAGAGAGCTCGAAGACGCAATGG CGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAAAAGCTGATCTTTCGG
genomic: ACACCGCAAAAGAGTAAAGGGACGCTAGAGAGAGCTCGAAGACGCAATGGgtaagcctaa ... atctgaacagCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAAAAGCTGATCTTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCGTCTTCTTCTTCATTTTTCTCTAGGGTTTCTAATCTCTTATAACAACACCGCAAAAGAGTAAAGGGACGCTAGAGAGAGCTCGAAGACGCAATGGgtaagcctaaattctcaaactttttcctctgttaacacacaatttcgtacgtttaggttatgagatttgattttatattgtgaaatggaatctgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA