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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCTAATCTCCAAGAAGTCATTCTCGGAACAAAGCTTGCCATTCTTTTTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatatttttccgctgtttcattgataatacattgagaacatcattcaaaatattcgcaaaaagagttagaatacgaaacgcctacagatttttat...

Basic information

species Arabidopsis thaliana
transcript AT2G38170.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502341|gb|HO207881.1|HO207881
EST:     TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAG                         CCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGA
genomic: TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGA
EST: gi|124761603|gb|EH851733.1|EH851733
EST:     TTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAG                         CCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTG
genomic: TTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTG
EST: gi|125227667|gb|EL241752.1|EL241752
EST:     TTGTGGCGTCAGTCAG                         CCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGA
genomic: TTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGA
EST: gi|125244175|gb|EL258260.1|EL258260
EST:     TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAG                         CCTTGGATATTTGGACTTAGCTTGCTAGGA
genomic: TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGA