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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGGGTTTATTCTTCATTGCTTGAGCTTCCTTCTCTTCTTCTTCTTCAAGCCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctctgattcctgttttttcattttctaatttcctatttacgggtttttactaatcttctattgatcctccag

Basic information

species Arabidopsis thaliana
transcript AT2G37270.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164193319|gb|ES024454.1|ES024454
EST:     AAGCCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAG                         TCATGGCCGCCTCCGCAGAAATCG
genomic: AAGCCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCG
EST: gi|125205065|gb|EL220019.1|EL220019
EST:     CCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAG                         TCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACC
genomic: CCGCGGCTAAAGATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACC
EST: gi|124961896|gb|EL036358.1|EL036358
EST:     ATCCCTACTTCTCTCGACACTTATAGAGTTTCAG                         TCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA
genomic: ATCCCTACTTCTCTCGACACTTATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA
EST: gi|124761847|gb|EH851977.1|EH851977
EST:     TATAGAGTTTCAG                         TCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA
genomic: TATAGAGTTTCAGgtccattctc ... gatcctccagTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCA