1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGACACTTCTGGTTTCGTCAATTTCTACTGGGATAAAGCTCTCTACTACCTTTTTGCTCAGAGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAGgtagcttcacttgttccttgttcttatagatatcgctttctcgtattagtgcttgaaaagtgttgcaaccagttctaattcgagaaatttacatgaatgt...
species | Arabidopsis thaliana |
transcript | AT2G30700.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTTTGCTCAGAGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAG GTTGTTGTAGAGGTGTTTTTGCCAGCCTTGGTGCTGGTCATGGATTTTATCEST: gi|19879027|gb|AU239858.1|AU239858
genomic: TTTTTGCTCAGAGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAGgtagcttcac ... tcttctgaagGTTGTTGTAGAGGTGTTTTTGCCAGCCTTGGTGCTGGTCATGGATTTTATC
EST: TTTTTGCTCAGAGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAG GTTGTTGTAGAGGTGTTTTTGCCAGCCTTGGTGCTGGTCATGGATTTTATC
genomic: TTTTTGCTCAGAGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAGgtagcttcac ... tcttctgaagGTTGTTGTAGAGGTGTTTTTGCCAGCCTTGGTGCTGGTCATGGATTTTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACACTTCTGGTTTCGTCAATTTCTACTGGGATAAAGCTCTCTACTACCTTTTTGCTCAGAGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAGgtagcttcacttgttccttgttcttatagatatcgctttctcgtattagtgcttgaaaagtgttgcaaccagttctaattcgagaaatttacatgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcg