1 5' 3' |
AGATTGCATCTTCGCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGgttccatctccttctcatttccccataactatatgctatatattggtttttcttccatgatattttggtccgttgaaatcccttccatatgctttctatt...
species | Arabidopsis thaliana |
transcript | AT2G30130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAG GAGCTACCAGTTCATCAAAGAGCTGACGCG-TGAATAGTCTGGTTTTTGAAEST: gi|86022261|gb|DR318014.1|DR318014
genomic: CCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGgttccatctc ... attgtcacagGAGCTACCAGTTCATCAAAGAGCTGACGCGGTGAATAGTCTGGTTTTTGAA
EST: CCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAG GAGCTACCAGTTCATCAAAGAGCTGACGCGGTGAATAGTCTGGTTTTTGAA
genomic: CCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGgttccatctc ... attgtcacagGAGCTACCAGTTCATCAAAGAGCTGACGCGGTGAATAGTCTGGTTTTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTGCATCTTCGCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGgttccatctccttctcatttccccataactatatgctatatattggtttttcttccatgatattttggtccgttgaaatcccttccatatgctttctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccttcc