1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGAGCCTGATACCGTTGAATGGAGTGGTCGGATCCAGTTTCATCGTATCAATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgcttatcgatttcgttttttgatctcttgttcttcggtgtttatgatagaagtctcagatctgattcgttatcggaattcagatgtttcgcaatgtattgagatcggtgatgttgtgatgtaattctgatgtttctttttggattcgcag
species | Arabidopsis thaliana |
transcript | AT2G27860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTEST: gi|116380179|gb|EG422771.1|EG422771
genomic: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
EST: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTEST: gi|116377085|gb|EG419677.1|EG419677
genomic: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
EST: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTEST: gi|116377084|gb|EG419676.1|EG419676
genomic: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
EST: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTEST: gi|125302829|gb|EL316914.1|EL316914
genomic: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
EST: GATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTEST: gi|125326821|gb|EL340901.1|EL340901
genomic: GATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGT
EST: CTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTEST: gi|116380174|gb|EG422766.1|EG422766
genomic: CTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
EST: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTEST: gi|125278513|gb|EL292598.1|EL292598
genomic: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
EST: CATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATEST: gi|116380171|gb|EG422763.1|EG422763
genomic: CATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGAT
EST: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTG ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
genomic: ATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgc ... ggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCCTGATACCGTTGAATGGAGTGGTCGGATCCAGTTTCATCGTATCAATATTAAGCATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGgtaaaaatgcttatcgatttcgttttttgatctcttgttcttcggtgtttatgatagaagtctcagatctgattcgttatcggaattcagatgtttcgcaatgtattgagatcggtgatgttgtgatgtaattctgatgtttctttttggattcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG