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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGACTGTTTTTGGGTCTGCTTCAATTGCAGTGGAAGAGATGGTGTTCTTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAgtaagaatcagcataatcgttacttagaaagaaaaaaacaatatctttttgagcactagaaagctctctctctctctctgagtttgtgctttttataatcccag

Basic information

species Arabidopsis thaliana
transcript AT2G17695.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061786|gb|DR357543.1|DR357543
EST:     TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTAATCAACAA                         AACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
EST: gi|86086361|gb|DR382120.1|DR382120
EST:     AAGTAATCACCAA                         AACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: AAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
EST: gi|19878362|gb|AU239193.1|AU239193
EST:     TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAA                         AACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
EST: gi|86061618|gb|DR357375.1|DR357375
EST:     TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTAATCAACAA                         AACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
EST: gi|86061787|gb|DR357544.1|DR357544
EST:     TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTAATCAACAA                         AACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
EST: gi|86084935|gb|DR380694.1|DR380694
EST:     ACAAGTAATCAACAA                         AACAGGAACCTTCAATTATGACWACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: ACAAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
EST: gi|86061788|gb|DR357545.1|DR357545
EST:     TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTAATCAACAA                         AACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC
genomic: TTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAgtaagaatca ... ataatcccagAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTC