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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTATCAGCAAGAAAATGTTAACCACATTTGTCCTCACTATCCTCTTAGCCGTATCTTTTGTTCATTGCTCCGATAGAACTTCTGgtattagcttattatcatactactcaccttttttgtttaaatatgcatatgtttttgtatcctttccatgattgtgaatattggcttaatgattcttgtttaatag

Basic information

species Arabidopsis thaliana
transcript AT2G12475.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164115813|gb|ES111282.1|ES111282
EST:     CTATCCTCTTAGCCGTATCTTTTGTTCATTGCTCCGATAGAACTTCTG                         GTGTTGGTATAAATCAAGAGTA
genomic: CTATCCTCTTAGCCGTATCTTTTGTTCATTGCTCCGATAGAACTTCTGgtattagctt ... tgtttaatagGTGTTGGTATAAATCAAGAGTA
EST: gi|163994228|gb|ES114678.1|ES114678
EST:     CACTATCCTCTTAGCCGTATCTTTTGTTCATTGCTCCGATAGAACTTCTG                         GTAGTTAGGTATAAATCAAGAGTATGCAAAATGCT
genomic: CACTATCCTCTTAGCCGTATCTTTTGTTCATTGCTCCGATAGAACTTCTGgtattagctt ... tgtttaatagGT-GTT-GGTATAAATCAAGAGTATGCAAAATGCT