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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGTAGTTTAGTGACGTTGGTTCTTAGTTGTACAGTTGCCGCTGGAGTTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAGgtacttactattactcttgtcattgttaccatttctatcacttgtggctttctctatagcaatttagattcgagggttttgttcttgtgtagctttgtac...

Basic information

species Arabidopsis thaliana
transcript AT2G02860.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 1
GAATTGTAGTTTAGTGACGTTGGTTCTTAGTTGTACAGTTGCCGCTGGAGTTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAGgtacttactattactcttgtcattgttaccatttctatcacttgtggctttctctatagcaatttagattcgagggttttgttct-tgtgtagctttgtac-
  |  || ||||   ||| ||| |||| |||||||   ||||||| || ||||||||||||||||| ||||| ||||| ||  | |||||||||||||||||  |   | ||  | |||   |||    | ||     || || ||| | |  ||    |  | |    ||    ||| |||  | ||  ||  | ||  | 
ACACGGTGGTTTGAGGACTTTGATTCTCAGTTGTATGATTGCCGCCGGTGTTCAATTTGGTTGGGCCTTGCAGCTTTCCCTATTGACTCCTTATATTCAGgttttgttttttgtttttgct-ttgccgtctttctctacaatt-tggttgtaacttattctttctctgatctctcgttatgtggtgtgcataattctgatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439432|gb|EG482024.1|EG482024
EST:     TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAG                         ACCCTTGGAATATCGCATGCTTTCTCTTCGTTTATTTGGCTGTGCGGCCCA
genomic: TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAGgtacttacta ... gttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCA
EST: gi|116439431|gb|EG482023.1|EG482023
EST:     TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAG                         ACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCA
genomic: TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAGgtacttacta ... gttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCA