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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCCGCCGAAGCAGTCGGAGACGGCTCTATCTGCTCTTCTAAGCCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAGgtattttctatctttatcgagatttgaaaatgtgattttgttgccttagtcgtgcttatctcccaatgtttggtttggtgatgtaatgacag

Basic information

species Arabidopsis thaliana
transcript AT1G71790.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71790.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G36400.1 (Glycine max), 5'ss of exon 1
AATGCCGCCGAAGCAGTCGGAGACGGCTCTATCTGCTCTTCTAAGCCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAGgtattttctatctttatcgagatttgaaaatgtgattttgttgccttagtcgtgcttatctcccaatgtttggtttggtgatgtaatgacag
 || |||||||| ||  | || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||||||||||||||  || || ||||| |    | ||||   |         |||| |    |   |    || |     || |||| | ||  ||| |||    |  |   |    
GATTCCGCCGAAACACACAGAAACAGCTCTGTCTGCGCTTCTGAGCCTTATGCCTCACCACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAGgtctcccttttcttctgc------cctaaatctttcctcaattttctaatgaatgttgtctcacgat--ttgcttttccaactttcag----