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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTTGATCCATTTTTCCGCTTCAATCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatcactttactccgatctccaactagtaatctgctttttctctattgcgactttgcgatacttccattttcgtgcgttttctagtgtctaaat...

Basic information

species Arabidopsis thaliana
transcript AT1G60070.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064706|gb|DR360463.1|DR360463
EST:     CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG                         CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: gi|86064708|gb|DR360465.1|DR360465
EST:     CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG                         CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: gi|19875009|gb|AU235840.1|AU235840
EST:     CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG                         CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: gi|86064710|gb|DR360467.1|DR360467
EST:     CTTCGTACCGCTCCGGTCATGAATCCATTNTNTTCCGGCACGCGTCTCAG                         CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: gi|86064707|gb|DR360464.1|DR360464
EST:     CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG                         CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC