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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTGGGCTGACTTCTCACAACTTGGGATCTTACGTTGCTGGCAAATGGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgcggtttcttcttacatgattttgaaaatgcctatgaaagttttatataattgaatgtttctggagatcaaattggtttcaatcattgagtt...

Basic information

species Arabidopsis thaliana
transcript AT1G54100.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486592|gb|EG529184.1|EG529184
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|301501447|gb|HO206987.1|HO206987
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|116486594|gb|EG529186.1|EG529186
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|116422589|gb|EG465181.1|EG465181
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|86061617|gb|DR357374.1|DR357374
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCACTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|301501173|gb|HO206713.1|HO206713
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|116420806|gb|EG463398.1|EG463398
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|301502366|gb|HO207906.1|HO207906
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|116486590|gb|EG529182.1|EG529182
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
EST: gi|301502094|gb|HO207634.1|HO207634
EST:     GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG                         CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG
genomic: GGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGgtttctccgc ... actgatgcagCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTG