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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTCATTACCTCAAACGCAAAGCAGATTCTGTTCCTTTACCAGTCGCGATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaaacaagaccaagatcataatccgatcagatctgtttcatttttttttttactgatttttgtttttttttgtgttcttgattgtgacag

Basic information

species Arabidopsis thaliana
transcript AT1G52880.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52880.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G35560.1 (Glycine max), 5'ss of exon 1
GTAATTCATTACCTCAAACGCAAAGCAGATTCTGTTCCTTTACCAGTCGCGATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagtt-----------------gaaacaaga----------ccaagatcataatccgatcagatctgtttcatttttttttttac------tgatttttgtttttttttgtgttcttgattgtgacag------------
||| |||| ||||||||    ||||||| ||||| |||| | || || || ||||||||||| |||||||| ||||| || ||||||||||| || ||||||| |||                 ||| ||| |            | | ||| ||  | |   | | ||||| | ||||| ||||        |  ||||||| ||| ||    || ||  || |    |            
GTAGTTCACTACCTCAAGAAAAAAGCAGCTTCTGCTCCTCTTCCGGTAGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGgtatgttcttcaatttcatccaacgaatcaaaagattcaaactttacgttcaaaactcaaatgggtttgttttactttttattttgtattatttactttttgtatttattatgatttttctttatttttgtgtggttggcag

upper sequence: AT1G52880.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA12G34990.1 (Glycine max), 5'ss of exon 1
GTAATTCATTACCTCAAACGCAAAGCAGATTCTGTTCCTTTACCAGTCGCGATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagtt---------------------gaaacaaga----------ccaagatcataatccgatcagatctgtttcatttttttt-tttactg--atttttgtttttttttgtgttcttgattgtgacag----
||  |||| ||||||||    ||| ||| ||||| |||| | || || || || |||||||| |||||||| ||||| || ||||||||||| || ||||||| |||                     ||| ||| |           || | ||| ||  | |   | |||| ||  |||||||| |||| |   ||| |  ||||| ||| | || ||| |||||        
GTGGTTCACTACCTCAAGAAAAAAACAGCTTCTGCTCCTCTTCCGGTAGCCATAATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGgtatgttcttcaattaatttcatccaacgaatcaaaagattcaaacttcacgttcaaaactcaaatgggtctgctttgttttttttatttattattattatgatttttctttatatt-ttgtttgtggttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041643|gb|DR337398.1|DR337398
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAAC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAAC
EST: gi|86041644|gb|DR337399.1|DR337399
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
EST: gi|86041638|gb|DR337393.1|DR337393
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
EST: gi|86041642|gb|DR337397.1|DR337397
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
EST: gi|86041640|gb|DR337395.1|DR337395
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGAT--ATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
EST: gi|86041645|gb|DR337400.1|DR337400
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
EST: gi|86041646|gb|DR337401.1|DR337401
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATMMATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAMCAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
EST: gi|86041647|gb|DR337402.1|DR337402
EST:     GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCG                         CGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC
genomic: GATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGgtaagttgaa ... attgtgacagCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATC