Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTGATTCACGATTTAGCTAAAGGCTCCGTTGAATTTGACACCGTTACGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaacttgagtttttactcaattatttggtttatcaaactttatactttctcatcatttgaatttgactttctagattatataatcatagaaaatgtatgcagtttctaatcagattaatggaattttgttttataattatcttgatgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G52330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116393080|gb|EG435672.1|EG435672
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116393057|gb|EG435649.1|EG435649
EST:     GGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTC
genomic: GGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTT-AAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTC
EST: gi|116375858|gb|EG418450.1|EG418450
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116393074|gb|EG435666.1|EG435666
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTTTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116393087|gb|EG435679.1|EG435679
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTTTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116375863|gb|EG418455.1|EG418455
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116393044|gb|EG435636.1|EG435636
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116375860|gb|EG418452.1|EG418452
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTTTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116393071|gb|EG435663.1|EG435663
EST:     GGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTC
genomic: GGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTT-AAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTC
EST: gi|116375857|gb|EG418449.1|EG418449
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTTTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116375859|gb|EG418451.1|EG418451
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
EST: gi|116393073|gb|EG435665.1|EG435665
EST:     CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAG                         GCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT
genomic: CGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGgtaaggaact ... tgatgaacagGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCT