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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCTCAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTGgtgcgtttgcgtttttcttgatttttccaataatcttttttcttgtttttgagttttttcttgaactttgtgtttagtgtttcaagattatttttgttta...

Basic information

species Arabidopsis thaliana
transcript AT1G47670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA15G07440.1 (Glycine max), 5'ss of exon 1
CTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCTCAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTGgtgcgtttgcgtttttcttgatttttccaataatcttttttcttgtttttgagttttttcttgaactttgtgtttagtgtttcaagattatttttgttta
|||| |||||||| ||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||| | ||||| || ||||| | |||||||||||   ||| | |   | || |       |     | |||| | | | ||  ||||            |     ||  ||||   | |     |   ||| 
CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTGgtaacttttcctagctgttcaccacgttacattacattttgcatatgttcaagttcaactgcactggtcaaaatttctgttgtgaaacagcatgcatttt

upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G31880.1 (Glycine max), 5'ss of exon 2
CTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCTCAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTGgtgcgtttgcgtttttcttgatttttccaataatcttttttcttgtttttgagttttttcttg---aactttgtgtttagtgtttcaagattatttttgttta
|||| |||||||| ||||| || ||||| |||||||| ||||| ||||||||||| || || |||||  || | || || || ||||| | ||||||||||| | ||| | |   | || |       |     | |||| | | |  |  |  ||| | |||   |||    ||  |  | | |  |     |  ||||   
CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTCCAGGCCCTCTTTTTGCCAGTTGCTTTTGCTTATCTTGGCTGgtaccttttcctagctattcaccacgttacattacattttgcatatggtcaaaatttctgttgtgaaacagcatgccttttttattgatggcttccttgt---

upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 1
CTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCTCAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTGgtgcgtttgcgtttttcttgatttttccaataatcttttttcttgtttttg---agtttttt-cttgaactttgtgtttagtgtttcaagattatttttgttta
|||| ||||| ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||| | || || || || || ||||| |||||||  | || |  |     || |   ||| ||| | ||| ||    |  |||   ||||| ||  ||||  | | |  ||| |   ||||  || |   || |  
CTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgtatgatttc--taccactgctccatcctatattttttcttagcttcattgcgcagtttattatttgatttctcttcttactcagtcaattttttgggtgct--