1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTGCATCTGTTCCCGAGCGGGCTACTCGGCTTAATTGCAGCCATAACGATCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAGgtgcgcgccttcgttaatttcttcctagtatctcaaatttttgtggttttgttcgtttggccgaaatggatttgattatcggatgcttggatccttggtg...
species | Arabidopsis thaliana |
transcript | AT1G27385.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAG AAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTGEST: gi|301503145|gb|HO208685.1|HO208685
genomic: AAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAGgtgcgcgcct ... tgggatgcagAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTG
EST: TCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAG AAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTGEST: gi|19876202|gb|AU237033.1|AU237033
genomic: TCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAGgtgcgcgcct ... tgggatgcagAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTG
EST: TCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAG AAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTGEST: gi|86079028|gb|DR374785.1|DR374785
genomic: TCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAGgtgcgcgcct ... tgggatgcagAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTG
EST: TCTCAAGGCAATCTCAG AAGTGTCAAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATTEST: gi|124722985|gb|EH814387.1|EH814387
genomic: TCTCAAGGCAATCTCAGgtgcgcgcct ... tgggatgcagAAGTGTC-AAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATT
EST: AAGCTGTTCTCAAGGCAATCTCAG AAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATT
genomic: AAGCTGTTCTCAAGGCAATCTCAGgtgcgcgcct ... tgggatgcagAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCATCTGTTCCCGAGCGGGCTACTCGGCTTAATTGCAGCCATAACGATCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAAGGCAATCTCAGgtgcgcgccttcgttaatttcttcctagtatctcaaatttttgtggttttgttcgtttggccgaaatggatttgattatcggatgcttggatccttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT