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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGATGTCACGAATATGTAGAAGCTCTAGAAGAAGAACAAAAAAAGATTCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttattacacatcctcttttgatatatatattcttcgttttcacgatcgcttccagtttcttaattgtttacatatcattcttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G25550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25550.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 1
AAGAGATGTCACGAATATGTAGAAGCTCTAGAAGAAGAACAAAAAAAGATTCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttattacacatcctcttttgatatatatattcttcgttttc-acgatcgcttccagtttcttaattgtttacatatcatt--cttgtag
 |||| ||||| || ||| | |||||  | || || || |    ||||||||| |||||||||||||| || ||| | |||||||| ||||||| ||||||||    ||   ||  ||    |||    |   |||| ||  || ||     | | ||      | || | ||  |   | || |    ||| ||
CAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgta----taccccatctctctctttttcttccttatttttttttctctgttttagattttgaggtgttgagtggatgtgtgtcgtgggtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502815|gb|HO208355.1|HO208355
EST:     TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAG                         CTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
genomic: TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttat ... attcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
EST: gi|301501629|gb|HO207169.1|HO207169
EST:     TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAG                         CTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
genomic: TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttat ... attcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
EST: gi|116431435|gb|EG474027.1|EG474027
EST:     TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAG                         CTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
genomic: TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttat ... attcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG