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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATAGAGCTTCAATGGCGAGTTCCTCTGGTGCTAAGTGGGCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctttcgtgtgtagatgtttttgtttcaattcgaaacgattctgaattgactcaatttatgagcttttttggctgttcatttgattgggtttgtgaattcgatattgaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G21065.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164235656|gb|ES215381.1|ES215381
EST:     CTTATTACTCCAAAG                         ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATT
genomic: CTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATT
EST: gi|86078659|gb|DR374416.1|DR374416
EST:     CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG                         ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
genomic: CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
EST: gi|116377317|gb|EG419909.1|EG419909
EST:     CCATCACTCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG                         ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
genomic: CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
EST: gi|125258152|gb|EL272237.1|EL272237
EST:     CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG                         ATATTGAAAGAAATAAGGGAAGACTTG
genomic: CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTG
EST: gi|124950414|gb|EL025880.1|EL025880
EST:     CTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAGAG                         ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
genomic: CTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
EST: gi|86028440|gb|DR324193.1|DR324193
EST:     CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG                         ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
genomic: CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
EST: gi|116422128|gb|EG464720.1|EG464720
EST:     CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG                         ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT
genomic: CCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGgtttcatctt ... attgaaacagATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCT