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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTTCCTCTACTACCACCTCTCAAATCTCAATTCGCCGATTAGTAACTCCGTCCAAGACCATTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCCgtgagttcctgctctgttccgtttggtttttctgttttggaatttcagtatttttcctattgaatttgttgcgatatgatgtccaaatttttggtttgttgagtgatgttccgatatttccgttatcaatcatcttccactgttcgcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G09150.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478254|gb|EG520846.1|EG520846
EST:     TTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCC                         GGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA
genomic: TTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCCgtgagttcct ... tcgcttgcagGGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA
EST: gi|86061003|gb|DR356760.1|DR356760
EST:     CGTCCAAGACCATTCTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCC                         GGAAGAAGATACCATAGTTAGAASCTGGTGATCATTTTCAATAAACCTCGA
genomic: CGTCCAAGACCATTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCCgtgagttcct ... tcgcttgcagGGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA
EST: gi|86061005|gb|DR356762.1|DR356762
EST:     CGTCCAAGACCATTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCC                         GGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA
genomic: CGTCCAAGACCATTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCCgtgagttcct ... tcgcttgcagGGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA
EST: gi|86061004|gb|DR356761.1|DR356761
EST:     CGTCCAAGACCATTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCC                         GGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA
genomic: CGTCCAAGACCATTTTCCGCCGTGACACCGTCCACGGTCTCTCTCAGTCCgtgagttcct ... tcgcttgcagGGAAGAAGATACCATAGTTAGAAGCTGGTGATCATTTTCAATAAACCTCGA