1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATTTTACTCATTTGAGCAGACCCCGAACTCTTCCACTCTCCAGTCACAGCCACAGAGgtaaatctctctcctttttcctttttttgctcaaatattttctgtcgcacgaattgctaatccaaggatacgtaatcatgagttcgtactcaatagcaag...
species | Arabidopsis thaliana |
transcript | AT1G08110.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCACTCTCCAGTCACAGCCACAGAG AGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCAEST: gi|116447692|gb|EG490284.1|EG490284
genomic: TCCACTCTCCAGTCACAGCCACAGAGgtaaatctct ... gattttgtagAGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCA
EST: ACTCTCCAGTCACAGCCACAGAG AGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCAEST: gi|116447716|gb|EG490308.1|EG490308
genomic: ACTCTCCAGTCACAGCCACAGAGgtaaatctct ... gattttgtagAGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCA
EST: AGACCCCGAACTCTTCCACTCTCCAGTCACAGCCACAGAG AGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCAEST: gi|125192839|gb|EL207793.1|EL207793
genomic: AGACCCCGAACTCTTCCACTCTCCAGTCACAGCCACAGAGgtaaatctct ... gattttgtagAGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCA
EST: TCACAGCCACAGAG AGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCA
genomic: TCACAGCCACAGAGgtaaatctct ... gattttgtagAGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTTACTCATTTGAGCAGACCCCGAACTCTTCCACTCTCCAGTCACAGCCACAGAGgtaaatctctctcctttttcctttttttgctcaaatattttctgtcgcacgaattgctaatccaaggatacgtaatcatgagttcgtactcaatagcaag
- - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagcaa