Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTTAACCTCTGCAGAAATCATGAGGCAGCAAATGAAGGTGACAGAACAGAGTGACACTCGGCTACGGAAAACCCTAATGAGGACGCTTGTTGGCCAAgtaagttgctctgtttttaaattgtgaatgaaactctgtttcttgattaattaataaaatgtttataactgttattttttag

Basic information

species Arabidopsis thaliana
transcript AT1G04470.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04470.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G27810.1 (Glycine max), 5'ss of exon 1
-ACCGTTAACCTCTGCAGAAATCATGAGGCAGCAAATGAAGGTGACAGAACAGAGTGACACTCGGCTACGGAAAACCCTAATGAGGACGCTTGTTGGCCAAgtaagttgctctgtttttaaattgt---gaatgaaactctgtttcttgatt---aattaataaaatgtttataac-------tgttattttttag-----
 |||||  ||    || ||  | ||||||| ||| |||  |||| | || ||||| || |  |||||  ||||||| || ||||||||||||||||||||||||||      |||    | ||| |     | | || |  |||| || |||   | ||  |||| |  ||  |||        ||| |||||||      
GACCGT-GACAATGGCGGAGGTTATGAGGCTGCAGATGGGGGTGTCGGAGCAGAGCGATAGCCGGCTGAGGAAAACACTCATGAGGACGCTTGTTGGCCAAgtaagacaacatgtgcaaacatttttctataaggaaataagtttttttatttgaactttttaaattaattgaaacgcattcacgttgttttttactgcga

upper sequence: AT1G04470.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv05s0049g01560.t01 (Vitis vinifera), 5'ss of exon 2
ACCGTTAACCTCTGCAGAAATCATGAGGCAGCAAATGAAGGTGACAGAACAGAGTGACACTCGGCTACGGAAAACCCTAATGAGGACGCTTGTTGGCCAAgta------agttgctctgtttttaaattgtgaatga-------aactctgtttcttgattaattaataaaatgtttataactgttattttttag-----
 || || || || || || |||||||||||||| |||| |||||| || |||||||| | | ||||||| || ||||| ||||| |  || ||||||||||||      ||||    | |   | ||     || ||       |||  | | |     ||||   | |   |||||   |   ||| ||   |      
GCCATTGACGTCGGCGGAGATCATGAGGCAGCAGATGAGGGTGACTGAGCAGAGTGATAATAGGCTACGCAAGACCCTCATGAGAAGCCTCGTTGGCCAAgtacgtatcagttatcatatgcatgaagaaaaaaggattaggaaaacgttctcttcaagttaacccaaaggttgtttcagaaaattaattcacatagaac