1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccaaaatgacatgcatttatacatagagggagctaactagctaaggtcgtatattccatggtttacgcaagaacaggatgtgactcttattttctttcagTGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCACCCTTCGCGCCACACTTGGCTGAGGAGCTTTGGTTTCGCCTCGGACATC
species | Zea mays |
transcript | GRMZM2G566786_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAG TGGGAAACCCAGCCAAAATCTGTTATTEST: gi|20507338|gb|BQ279585.1|BQ279585
genomic: T-AACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAGgtgaaaccaa ... tttctttcagTGGGAAACCCAGCCAAAATCTGTTATT
EST: TTAACACTGCAATATCTGCAATGATGGAGTTTCTGAATGCTGCATACAAG TGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCAEST: gi|211179945|gb|FL164668.1|FL164668
genomic: TTAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAGgtgaaaccaa ... tttctttcagTGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCA
EST: TTAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAG TGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCAEST: gi|166545358|gb|EG306349.1|EG306349
genomic: TTAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAGgtgaaaccaa ... tttctttcagTGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCA
EST: TTAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAG TGGGAAACCCAGEST: gi|26456635|gb|CA828218.1|CA828218
genomic: TTAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAGgtgaaaccaa ... tttctttcagTGGGAAACCCAG
EST: TTAACACTGCAATATCTGCAATGATGGAGTTTCTGAATGCTGCATACAAG TGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCA
genomic: TTAACACTGCAATATCTGCAATGATGGAGTTTGTGAATGCTGCATACAAGgtgaaaccaa ... tttctttcagTGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCA
gtcgtatattccatggtttacgcaagaacaggatgtgactcttattttctttcagTGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCACCCTTCGCGCCACACTTGGCTGAGGAGCTTTGGTTTCGCCTCGGACATC
ctcttattttctttc CT-rich tract
ttattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaaatgacatgcatttatacatagagggagctaactagctaaggtcgtatattccatggtttacgcaagaacaggatgtgactcttattttctttcagTGGGAAACCCAGCCAAAATCTGTTATTGAATCCTTTGTTCTGCTGCTTTCACCCTTCGCGCCACACTTGGCTGAGGAGCTTTGGTTTCGCCTCGGACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtg