1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacaagaacatatccagcccttgctgtgcatgacctgaacagataaagaaatgggggatacatcaaaagctgacgactctgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATCTTTGTTGGAGAAAACTCACAGTTCCATGCGGACGCTGTCCACATGACC
species | Zea mays |
transcript | GRMZM2G413857_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAEST: gi|71443344|gb|DR824394.1|DR824394
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTA
EST: ACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGGCA-TTAGCAA GCGGCATGACTTAACEST: gi|26457201|gb|CA828784.1|CA828784
genomic: ACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGG-CAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTAAC
EST: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATEST: gi|19351457|gb|BM895989.1|BM895989
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
EST: GACGAGAGGCAGGGAGCTAATGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
ctgaacagataaagaaatgggggatacatcaaaagctgacgactctgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATCTTTGTTGGAGAAAACTCACAGTTCCATGCGGACGCTGTCCACATGACC
agctgac putative branch site (score: 3)
ctctgtcc putative PPT
ataaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaagaacatatccagcccttgctgtgcatgacctgaacagataaagaaatgggggatacatcaaaagctgacgactctgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATCTTTGTTGGAGAAAACTCACAGTTCCATGCGGACGCTGTCCACATGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA