Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taacatcttctgatccttcgaagttgcttgcatttcttggacgcataactataggactgtcttgatacatctcattaccatgtctacgtacaacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACAC

Basic information

species Zea mays
transcript GRMZM2G160842_T02
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211494115|gb|FL300919.1|FL300919
EST:     TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT                         GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
genomic: TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: gi|89249844|gb|DY621630.1|DY621630
EST:     TATTTGATGCACTCTCTGCTCGTATTAGAGTT                         GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
genomic: TATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: gi|16746025|gb|BM032455.1|BM032455
EST:     TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT                         GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
genomic: TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: gi|78106503|gb|DV524921.1|DV524921
EST:     TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT                         GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
genomic: TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: gi|18384856|gb|BM418055.1|BM418055
EST:     TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT                         GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
genomic: TATGCGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taacatcttctgatccttcgaagttgcttgcatttcttggacgcataactataggactgtcttgatacatctcattaccatgtctacgtacaacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT