1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattctctcagacttttttttgtgatggcaaatattatgcttcagtttcttgtctgatcatatgttttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGACGAGCTCTCTGGCGATGCCCATAG
species | Zea mays |
transcript | GRMZM2G144372_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|211035708|gb|FL440354.1|FL440354
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|32790927|gb|CD943163.1|CD943163
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGGCATCATTCCTG TCTGCTGGTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|16377910|gb|BI992182.1|BI992182
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|116823457|gb|EC867003.1|EC867003
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|60394318|gb|DN227188.1|DN227188
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|37387887|gb|CF631146.1|CF631146
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|40336015|gb|CK370085.1|CK370085
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|89248670|gb|DY620456.1|DY620456
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|76012957|gb|DT940127.1|DT940127
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|71428527|gb|DR809577.1|DR809577
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|211396248|gb|FL321770.1|FL321770
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: TCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|40335990|gb|CK370060.1|CK370060
genomic: TCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|61117885|gb|DN558846.1|DN558846
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|61117886|gb|DN558847.1|DN558847
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|31664147|gb|CD573327.1|CD573327
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|31558493|gb|CD527705.1|CD527705
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: TGTCTTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|61117883|gb|DN558844.1|DN558844
genomic: TGTCTTT-GTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|37397212|gb|CF635901.1|CF635901
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|211430939|gb|FL367561.1|FL367561
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|5058953|gb|AI737429.1|AI737429
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: CTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|32910803|gb|CF015615.1|CF015615
genomic: CTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|71430058|gb|DR811108.1|DR811108
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TTTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATTEST: gi|37395039|gb|CF634799.1|CF634799
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|21843146|gb|BQ703727.1|BQ703727
genomic: GGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|67010828|gb|CO439577.1|CO439577
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|31358589|gb|CD442946.1|CD442946
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|20811126|gb|BQ295604.1|BQ295604
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|40336709|gb|CK370779.1|CK370779
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: CATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAACATCGAGAAGAAAGTAAGGAGCATCEST: gi|67022208|gb|CO450957.1|CO450957
genomic: CATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAGGAAAGTA-GGAGCATCEST: gi|37390080|gb|CF632266.1|CF632266
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|60342510|gb|DN209483.1|DN209483
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCEST: gi|61117882|gb|DN558843.1|DN558843
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaattctct ... tttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
tgtgatggcaaatattatgcttcagtttcttgtctgatcatatgttttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGACGAGCTCTCTGGCGATGCCCATAG
gtctgat putative branch site (score: 330)
aaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctctcagacttttttttgtgatggcaaatattatgcttcagtttcttgtctgatcatatgttttgcatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGACGAGCTCTCTGGCGATGCCCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA