1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caatccataacaagacaaaatcctaagtggaaaaaatacgttcccacttgccctcaactcattgtgtttcatactaatttgtttgctctactttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
species | Zea mays |
transcript | GRMZM2G138505_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|78081339|gb|DV509751.1|DV509751
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|211360336|gb|FL143959.1|FL143959
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|32864122|gb|CF003804.1|CF003804
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|101387921|gb|EB815974.1|EB815974
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|71762140|gb|DR960077.1|DR960077
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|211360335|gb|FL143958.1|FL143958
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAAEST: gi|71772236|gb|DR970173.1|DR970173
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
EST: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACG TCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
genomic: GGTCATATAGAGCTGCAGATGTTACATATCAACTCTTAAAGAACATAACGgtacaccttt ... ctttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
acttgccctcaactcattgtgtttcatactaatttgtttgctctactttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
tactaat putative branch site (score: 62)
ctctacttt putative PPT
tttcatactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatccataacaagacaaaatcctaagtggaaaaaatacgttcccacttgccctcaactcattgtgtttcatactaatttgtttgctctactttgtgcagTCTGTCAATGAGAATGTTCACATTACAAGTGATGATAAA
- - - - aacaaga
- - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc