1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgcaaatattttatgtagatgtctttctgtctcaattgtgcaattgttatttacatgcagcatttatctcatggtcaatgtaaacctgacagGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAAGTAAATATCAG
species | Zea mays |
transcript | GRMZM2G134396_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAATCTCGCCTGAGGGAGATATTTTTAAAGCAGGATAATCTTATTCANG GTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAAEST: gi|32835884|gb|CD975562.1|CD975562
genomic: TCAATCTCGCCTGAGGGAGATATTTTTAAAGCAGGATAATCTTATTCAAGgtgcaaatat ... aacctgacagGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAA
EST: TCAATCTCGCCTGAGGGAGATA-TTNTANAGCAGGATAATCTTATTCAAG GTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAAEST: gi|32863100|gb|CF002782.1|CF002782
genomic: TCAATCTCGCCTGAGGGAGATATTTTTAAAGCAGGATAATCTTATTCAAGgtgcaaatat ... aacctgacagGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAA
EST: TCAATCTCGCCTGAGGGAGATATTTTTAAAGCAGGATAATCTTATTCAAG GTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAA
genomic: TCAATCTCGCCTGAGGGAGATATTTTTAAAGCAGGATAATCTTATTCAAGgtgcaaatat ... aacctgacagGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAA
gtgcaattgttatttacatgcagcatttatctcatggtcaatgtaaacctgacagGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAAGTAAATATCAG
attgttatttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaaatattttatgtagatgtctttctgtctcaattgtgcaattgttatttacatgcagcatttatctcatggtcaatgtaaacctgacagGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAAGTAAATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG