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gttcgtgcaatggctggaaagttctggccgtggttcttgaaatcaatttaaatttcagataaagccttccttccttccctttacagttcttcttcatgctcctccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGCTCTATGCAACGCGTGCGAGATAGTAGTGTTCTGGACGCAAAGCGAGCTG
species | Zea mays |
transcript | GRMZM2G130333_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTGCTCGAA-GTCGGGGCTCTGCACGTTCGATGGGACACGCGGAGTAAG TGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGCEST: gi|211475048|gb|FL213523.1|FL213523
genomic: TGTGCTCGAAGGTC-GGGCTCTGCACGTTCGATGGGACACGCGGAGTAAGgttcgtgcaa ... ccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGC
EST: GTGTGCTCGAAGGTCGGGCTCTGCACGTTCGATGGGACACGCGGAGTAAG TGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGCEST: gi|110200388|gb|EC882285.1|EC882285
genomic: GTGTGCTCGAAGGTCGGGCTCTGCACGTTCGATGGGACACGCGGAGTAAGgttcgtgcaa ... ccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGC
EST: CTCGAAGGTCGGGCTCTCCACGTTCGATGGGACACGCGGAGTAAG TGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGCEST: gi|50332328|gb|CO527454.1|CO527454
genomic: CTCGAAGGTCGGGCTCTGCACGTTCGATGGGACACGCGGAGTAAGgttcgtgcaa ... ccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGC
EST: GATGGGACACGCGGAGTAAG TGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGC
genomic: GATGGGACACGCGGAGTAAGgttcgtgcaa ... ccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGC
ataaagccttccttccttccctttacagttcttcttcatgctcctccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGCTCTATGCAACGCGTGCGAGATAGTAGTGTTCTGGACGCAAAGCGAGCTG
cttccttccttccctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgcaatggctggaaagttctggccgtggttcttgaaatcaatttaaatttcagataaagccttccttccttccctttacagttcttcttcatgctcctccggtcgcagTGCTGCTGGCATCGAGAGTGTACCGGGATCCGTAGACGGCATGGCGGAAGCTCTATGCAACGCGTGCGAGATAGTAGTGTTCTGGACGCAAAGCGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG